We disclose a method of quantitatively characterizing crystalline defects by measuring low-temperature thermal conductivity in relatively clean organic molecular crystals, which is gaining increasing interest due to recent industrial attentions to organic semiconductor crystals and nonlinear-optical crystals. As the result of the measurement with representative organic semiconductor crystals of rubrene, the “phonon peak” of the conductivity in the temperature range of 10 ~ 20 K is indeed sensitive to the amount of strain dislocations in the crystals around only 1015 cm−3, demonstrating the usefulness of the present method.