Self-assembled layers of 10,12-pentacosadiyn-1-ol (PCDYol) physisorbed on graphite have been investigated by Scanning Tunneling Microscopy (STM). In STM images, a herringbone molecular arrangement was observed as in the case of other alkanols. Parallel bright lines, which are assigned to the columns of the diacetylene parts were observed. Among the lines, two different levels of brightness appearing in an alternating manner were observed. This is due to the difference in orientation of the alkyl chains with respect to the graphite surface lattice.